Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015800713.1_cds_XP_016471188.1_6315
CDS Infomation

[gene=LOC107793364] [db_xref=GeneID:107793364] [protein=pentatricopeptide repeat-containing protein At2g44880] [protein_id=XP_016471188.1] [location=23070..24773] [gbkey=CDS]
Sequence

ATGCTTCGAAACGCCGTTGATAGTAACGTCAATCTCCTCACCAAACTCATTTCCAGCTTC
TCCGTCAGCGACCCAGTAGCTGGAATCAGCCATGGACGCCGCGTGTTCGACACAAGTCCC
CAAAAGGACGACACTTTCCTCAGTAACACCATGATAAAGTCCCACATGGGAGTTGGCCAA
TTCGCCGAATCAACACTTCTGTATAGAGATTTACTAAGACACACTAGTTTTGAACCGGAC
AATTACACGTTTTCTAGCCTTTCCAAGTGTTGTGGTGCAAGAGTAGTGTTGTGGGAAGGC
TTGGAAGTTCATAATCATGTATTGAAGTATGGGTTTGTGTCGAATTTATTTGTGGCTACT
TCCTTGGTTGATATGTATGGGAAGCTTGATGAAATGGGTTTTGCTAGGAAGTTGTTTGAT
AAAATGCTTGAGAGAAGTTCAGTCTCGTGGACAGCTTTGATTGGTGGTTATTTGAAGTGT
GGAGGTATAGGTATTGCTGAAGGACTTTTTGATACAATGCCTGAGAAAGATGTAGCTGCA
TTCAATGTGATGATTGATGCTTACGTGAAGAAAGGAGATATGGTGTCAGCAAATAGATTG
TTTGAGGCAATGCCGGAGAGAAATGTGATTTCTTGGACTAGTATGATCGATGGGTACTGC
AGTAATGGTAGTGTAAGTGAAGCCAGGGTATTATTTGATGCAATGCCGGAGAGGAATTTA
TTCTCTTGGAATGCAATGATTGGTGGATACTGTCAAAACAAACAGCCGCAAGAGGCTTTG
AAATTGTTTCACGAGTTGCAGACAGTGACGACATTGGAGCCGGATGATGTTACTTTTGTT
AGTGTGCTACCAGCTATTGCTGATTTAGGTGCGTTAGATTTGGGTAACTGGGTTCACCAG
TATGTGAAGAGGAAAAAATTAGATAGATCTTCAAATGTTTGCACTGCTTTGGTTGATATG
TATGGCAAGTGTGGGGAAATTGCAAAAGCCAGGGAATTTTTCGATGAGGTAAAACTAAAA
GAGACATCAAGTTGGAATGCTTTAATTAATGGATTGGCGGTCAATGGATCTGCTAAAGAA
GCATTGGAGGTGTTTGAGGAGATGAAGAATAAAGGATACAAGCCGAATGAGGTTACTATT
CTTGGTGTTTTGTCAGCTTGTAACCATGGTGGATTGGTGGAGGAAGGCAAGAAATGGTTT
ATAGCAATGGAGAATTATGGGCTTACTCCGCAAATTGAGCACTATGGTTGTCTAGTTGAT
CTCTTGGGGAGGTCAGGGTGTTTGGAGGAAGCCGAAAACTTGATCGAAACCATGCCTTAT
GAGGTCAATGGAATAATATTGAGTTCCTTTCTATTTGCTTGCGGTTATGCCAAAGATGTT
ACAAGGGCTGAGAAGGTGAAGAAAAAGGCAATTGAGATGGAACCGTGGAATGATGGAATC
TACATTATGTTGAGGAACTTGTATGCCACCGACAAAAGGTGGAGTGATGTTGAAGACATT
AAGGGCTGGATGAGGAGAGAAGGGGCAAAAAAAGAGGCAGGTTGCAGTACAATTGAAGTT
AATGGTATGGTTTGGGAATTTTTAGCTGGAGATAAGATACATCCACAGTGTGAGGAAATA
CGTCTTCTATTGGAGCATTTGCGGTTGTACATGAGAGGTCAGGATACACCTTATAGTAAT
GATATTGGATTGGCTGAATTTTGA

Peptide Sequence

PEP ID

XP_016471188.1
PEP Infomation

PREDICTED: pentatricopeptide repeat-containing protein At2g44880 [Nicotiana tabacum]
Sequence

MLRNAVDSNVNLLTKLISSFSVSDPVAGISHGRRVFDTSPQKDDTFLSNTMIKSHMGVGQ
FAESTLLYRDLLRHTSFEPDNYTFSSLSKCCGARVVLWEGLEVHNHVLKYGFVSNLFVAT
SLVDMYGKLDEMGFARKLFDKMLERSSVSWTALIGGYLKCGGIGIAEGLFDTMPEKDVAA
FNVMIDAYVKKGDMVSANRLFEAMPERNVISWTSMIDGYCSNGSVSEARVLFDAMPERNL
FSWNAMIGGYCQNKQPQEALKLFHELQTVTTLEPDDVTFVSVLPAIADLGALDLGNWVHQ
YVKRKKLDRSSNVCTALVDMYGKCGEIAKAREFFDEVKLKETSSWNALINGLAVNGSAKE
ALEVFEEMKNKGYKPNEVTILGVLSACNHGGLVEEGKKWFIAMENYGLTPQIEHYGCLVD
LLGRSGCLEEAENLIETMPYEVNGIILSSFLFACGYAKDVTRAEKVKKKAIEMEPWNDGI
YIMLRNLYATDKRWSDVEDIKGWMRREGAKKEAGCSTIEVNGMVWEFLAGDKIHPQCEEI
RLLLEHLRLYMRGQDTPYSNDIGLAEF

Transcript Sequence

Gene sequence data has not been registered.